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1

Mitochondrial origins of fractional control in regulated cell death

Santos, Luís C., Vogel, Robert, Chipuk, Jerry E., Birtwistle, Marc R., Stolovitzky, Gustavo, Meyer, Pablo

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.87 MB

english, 2019

2

Silence on the relevant literature and errors in implementation

Bastiaens, Philippe, Birtwistle, Marc R, Blüthgen, Nils, Bruggeman, Frank J, Cho, Kwang-Hyun, Cosentino, Carlo, de la Fuente, Alberto, Hoek, Jan B, Kiyatkin, Anatoly, Klamt, Steffen, Kolch, Walter, Le

Journal:

Nature Biotechnology

Year:

2015

Language:

english

File:

PDF, 627 KB

english, 2015

3

Four-dimensional dynamics of MAPK information-processing systems

Boris N. Kholodenko, Marc R. Birtwistle

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2009

Language:

english

File:

PDF, 422 KB

english, 2009

4

Cell fate decisions are specified by the dynamic ERK interactome

Orton, Richard, von Kriegsheim, Alex, Baiocchi, Daniela, Birtwistle, Marc, Sumpton, David, Bienvenut, Willy, Kalna, Gabriella, Morrice, Nicholas, Yamada, Kayo, Lamond, Angus

Journal:

Nature Cell Biology

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

5

NFκB and HIF display synergistic behaviour during hypoxic inflammation

Ulrike Bruning, Susan F. Fitzpatrick, Till Frank, Marc Birtwistle, Cormac T. Taylor, Alex Cheong

Journal:

Cellular and Molecular Life Sciences

Year:

2012

Language:

english

File:

PDF, 1.34 MB

english, 2012

6

Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics

Takashi Nakakuki, Marc R. Birtwistle, Yuko Saeki, Noriko Yumoto, Kaori Ide, Takeshi Nagashima, Lutz Brusch, Babatunde A. Ogunnaike, Mariko Okada-Hatakeyama, Boris N. Kholodenko

Journal:

Year:

2010

Language:

english

File:

PDF, 1.93 MB

english, 2010

7

Endocytosis and signalling: A meeting with mathematics

Marc R. Birtwistle, Boris N. Kholodenko

Journal:

Molecular Oncology

Year:

2009

Language:

english

File:

PDF, 486 KB

english, 2009

8

Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise

Marc R Birtwistle, Jens Rauch, Anatoly Kiyatkin, Edita Aksamitiene, Maciej Dobrzyński, Jan B Hoek, Walter Kolch, Babatunde A Ogunnaike, Boris N Kholodenko

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 914 KB

english, 2012

9

Bayesian multivariate Poisson abundance models for T-cell receptor data

Greene, Joshua, Birtwistle, Marc R., Ignatowicz, Leszek, Rempala, Grzegorz A.

Journal:

Journal of Theoretical Biology

Year:

2013

Language:

english

File:

PDF, 582 KB

english, 2013

10

Regulatory Feedback Programs in the Apoptotic Decision-Making of Her2-Positive Breast Cancer Cells in Response to HER2 Inhibition

Sutera, Christina, Duran-Paez, Mercedes A., Haughney, Elizabeth, Gucwa, Azad, Birtwistle, Marc R., Fink, Marc Y.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

11

Mammalian protein expression noise: scaling principles and the implications for knockdown experiments

Birtwistle, Marc R., Kriegsheim, Alexander von, Dobrzyński, Maciej, Kholodenko, Boris N., Kolch, Walter

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.84 MB

english, 2012

12

Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses

Birtwistle, Marc R, Hatakeyama, Mariko, Yumoto, Noriko, Ogunnaike, Babatunde A, Hoek, Jan B, Kholodenko, Boris N

Journal:

Molecular Systems Biology

Year:

2007

Language:

english

File:

PDF, 642 KB

english, 2007

13

In silico model-based inference: an emerging approach for inverse problems in engineering better medicines

Klinke, David J, Birtwistle, Marc R

Journal:

Current Opinion in Chemical Engineering

Year:

2015

Language:

english

File:

PDF, 887 KB

english, 2015

14

CNS Anticancer Drug Discovery and Development Conference White Paper

Levin, Victor A., Tonge, Peter J., Gallo, James M., Birtwistle, Marc R., Dar, Arvin C., Iavarone, Antonio, Paddison, Patrick J., Heffron, Timothy P., Elmquist, William F., Lachowicz, Jean E., Johnson,

Journal:

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

15

Biology using engineering tools

Birtwistle, Marc R., Kolch, Walter

Journal:

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

16

Integrated Analysis for Quantitative Predictions of Drug Induced Cardiotoxicity

Shim, Jaehee V., Birtwistle, Marc R., Iyengar, Ravi, Sobie, Eric A.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 58 KB

english, 2016

17

Bistability in the Rac1, PAK, and RhoA Signaling Network Drives Actin Cytoskeleton Dynamics and Cell Motility Switches

Byrne, Kate M., Monsefi, Naser, Dawson, John C., Degasperi, Andrea, Bukowski-Wills, Jimi-Carlo, Volinsky, Natalia, Dobrzyński, Maciej, Birtwistle, Marc R., Tsyganov, Mikhail A., Kiyatkin, Anatoly, Kid

Journal:

Year:

2016

Language:

english

File:

PDF, 2.87 MB

english, 2016

18

Network pharmacodynamic models for customized cancer therapy

Gallo, James M., Birtwistle, Marc R.

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2015

Language:

english

File:

PDF, 322 KB

english, 2015

19

Cell size assays for mass cytometry

Stern, Alan D., Rahman, Adeeb H., Birtwistle, Marc R.

Journal:

Cytometry Part A

Year:

2016

Language:

english

File:

PDF, 909 KB

english, 2016

20

Europe PMC Funders Group Cell fate decisions are specified by the dynamic ERK interactome

Kriegsheim, Alex Von, Baiocchi, Daniela, Birtwistle, Marc, Sumpton, David, Morrice, Nicholas, Yamada, Kayo, Lamond, Angus, Kalna, Gabriella, Gilbert, David, Kolch, Walter

Year:

2013

Language:

english

File:

PDF, 3.09 MB

english, 2013

21

A Temporal Logic Inference Approach for Model Discrimination

Xu, Zhe, Birtwistle, Marc, Belta, Calin, Julius, Agung

Journal:

IEEE Life Sciences Letters

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

22

A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens

Bouhaddou, Mehdi, Barrette, Anne Marie, Stern, Alan D., Koch, Rick J., DiStefano, Matthew S., Riesel, Eric A., Santos, Luis C., Tan, Annie L., Mertz, Alex E., Birtwistle, Marc R., Mac Gabhann, Feilim

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 7.88 MB

english, 2018

23

Linear Approaches to Intramolecular Förster Resonance Energy Transfer Probe Measurements for Quantitative Modeling

Birtwistle, Marc R., von Kriegsheim, Alexander, Kida, Katarzyna, Schwarz, Juliane P., Anderson, Kurt I., Kolch, Walter, Lee, Leo T.O.

Journal:

Year:

2011

Language:

english

File:

PDF, 395 KB

english, 2011

24

Novel Somatic Mutations to PI3K Pathway Genes in Metastatic Melanoma

Shull, Austin Y., Latham-Schwark, Alicia, Ramasamy, Poornema, Leskoske, Kristin, Oroian, Dora, Birtwistle, Marc R., Buckhaults, Phillip J., Chammas, Roger

Journal:

Year:

2012

Language:

english

File:

PDF, 428 KB

english, 2012

25

Evaluating Strategies to Normalise Biological Replicates of Western Blot Data

Degasperi, Andrea, Birtwistle, Marc R., Volinsky, Natalia, Rauch, Jens, Kolch, Walter, Kholodenko, Boris N., Vrana, Kent E.

Journal:

Year:

2014

Language:

english

File:

PDF, 984 KB

english, 2014

26

Mitogen-Inducible Gene-6 Mediates Feedback Inhibition from Mutated BRAF towards the Epidermal Growth Factor Receptor and Thereby Limits Malignant Transformation

Milewska, Malgorzata, Romano, David, Herrero, Ana, Guerriero, Maria Luisa, Birtwistle, Marc, Quehenberger, Franz, Hatzl, Stefan, Kholodenko, Boris N., Segatto, Oreste, Kolch, Walter, Zebisch, Armin, B

Journal:

Year:

2015

Language:

english

File:

PDF, 4.17 MB

english, 2015

27

A Mechanistic Beta-Binomial Probability Model for mRNA Sequencing Data

Smith, Gregory R., Birtwistle, Marc R., te Pas, Marinus F.W.

Journal:

Year:

2016

Language:

english

File:

PDF, 5.37 MB

english, 2016

28

A Comparison of Methods for RNA-Seq Differential Expression Analysis and a New Empirical Bayes Approach

Wesolowski, Sergiusz, Birtwistle, Marc, Rempala, Grzegorz

Journal:

Biosensors (MDPI)

Year:

2013

Language:

english

File:

PDF, 3.86 MB

english, 2013

29

Mechanistic Systems Modeling to Improve Understanding and Prediction of Cardiotoxicity Caused by Targeted Cancer Therapeutics

Shim, Jaehee V., Chun, Bryan, van Hasselt, Johan G. C., Birtwistle, Marc R., Saucerman, Jeffrey J., Sobie, Eric A.

Journal:

Frontiers in Physiology

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

30

Validating Antibodies for Quantitative Western Blot Measurements with Microwestern Array

Koch, Rick J., Barrette, Anne Marie, Stern, Alan D., Hu, Bin, Bouhaddou, Mehdi, Azeloglu, Evren U., Iyengar, Ravi, Birtwistle, Marc R.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.77 MB

english, 2018

31

Fluorescence Multiplexing with Spectral Imaging and Combinatorics

Holzapfel, Hadassa Y., Stern, Alan D., Bouhaddou, Mehdi, Anglin, Caitlin M., Putur, Danielle, Comer, Sarah, Birtwistle, Marc R.

Journal:

ACS Combinatorial Science

Year:

2018

Language:

english

File:

PDF, 2.12 MB

english, 2018

32

Highly Multiplexed, Quantitative Tissue Imaging at Cellular Resolution

McCarthy, Madeline E., Birtwistle, Marc R.

Journal:

Current Pathobiology Reports

Year:

2019

Language:

english

File:

PDF, 574 KB

english, 2019

33

Predicting In Vivo Efficacy from In Vitro Data: Quantitative Systems Pharmacology Modeling for an Epigenetic Modifier Drug in Cancer

Bouhaddou, Mehdi, Yu, Li J, Lunardi, Serena, Stamatelos, Spyros K, Mack, Fiona, Gallo, James M, Birtwistle, Marc R, Walz, Antje‐Christine

Journal:

Clinical and Translational Science

Year:

2019

Language:

english

File:

PDF, 13.16 MB

english, 2019

34

Predicting In Vivo Efficacy from In Vitro Data: Quantitative Systems Pharmacology Modeling for an Epigenetic Modifier Drug in Cancer

Bouhaddou, Mehdi, Yu, Li J, Lunardi, Serena, Stamatelos, Spyros K, Mack, Fiona, Gallo, James M, Birtwistle, Marc R, Walz, Antje‐Christine

Journal:

Clinical and Translational Science

Year:

2019

File:

PDF, 13.16 MB

2019